RnoALTD0020903-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000014059 | Odf2l
Description
outer dense fiber of sperm tails 2-like [Source:RGD Symbol;Acc:1593831]
Coordinates
chr2:251017716-251018792:+
Coord C1 exon
chr2:251017716-251017825
Coord A exon
chr2:251017826-251017959
Coord C2 exon
chr2:251018657-251018792
Length
134 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAAG
5' ss Score
5.73
3' ss Seq
CTTTCACTTATTTTATAAAGGCA
3' ss Score
4.63
Exon sequences
Seq C1 exon
GAAGCCAAGTTGTCTGAAGCAGTCTCAGCTTCCAATGACTGGAAAAGTCGTTATGAGAAAATCGCAATAGAAAAAACTGAACTGGAAGTTCAGATCGAAACAATGAAGAA
Seq A exon
GTAAGCAAGAGTTTACACTGATTGCTGCCCCGTGCTGCAGTTCCGGGTGTTCTGGAGTCTGTAGTGAAGGAGCCTTCAGTGCTTCAGCCTTTCTTCCTCTAATGCAAACAGTGCTTCATATCCCGTACTTAAAG
Seq C2 exon
GCAAATCTCTCATCTTCTGGAAGACTTGAGGAAAATGGAAACTCATGGGAAAAATTCATGTGAAGAAATTCTTAGAAAACTTCACTCACTGGAAGATGAAAATGAAGCCTTAAATATTGAGAATGTGAAATTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014059-15-18,16-18-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.152
Domain overlap (PFAM):
C1:
PF104734=CENP-F_leu_zip=PD(11.0=29.7),PF0003816=Filament=FE(30.0=100)
A:
NA
C2:
PF0003816=Filament=PD(25.8=67.4),PF115593=ADIP=PU(30.5=69.6),PF0017016=bZIP_1=PU(53.7=47.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCAAGTTGTCTGAAGCAGT
R:
TCACATTCTCAATATTTAAGGCTTCA
Band lengths:
236-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]