RnoALTD0020904-2/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000014059 | Odf2l
Description
outer dense fiber of sperm tails 2-like [Source:RGD Symbol;Acc:1593831]
Coordinates
chr2:251026052-251027917:+
Coord C1 exon
chr2:251026052-251026084
Coord A exon
chr2:251026085-251026210
Coord C2 exon
chr2:251027832-251027917
Length
126 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTCC
5' ss Score
3.16
3' ss Seq
TTCTTTTAAATTCCACTCAGGTT
3' ss Score
7.48
Exon sequences
Seq C1 exon
ATGAGAGGCCAGGTGGAGACTCATCTGGAGCAG
Seq A exon
GTAGAGCAAGCCCGCAACTCCATCACCTCAGCCGAACAGAGACTCCAGGAGTGTCAGGAGAATCTGCAGCGCTGCAAAGAGAAGTGTGCAGAGCAGGCGCTCACCATTAGGGAGCTTCAGGGCCAG
Seq C2 exon
GTTGATGGAAACTATAGCCTTCTGACCAAGCTTTCTCTTGAGGAGGAAAATCATCTGATTCAGTTAAAGTGTGAGAACCTTAAAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014059-22-24,23-24,24-24-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.340 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0003816=Filament=FE(18.1=100)
A:
NA
C2:
PF0003816=Filament=FE(9.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGAGGCCAGGTGGAGAC
R:
AAGGTTCTCACACTTTAACTGAATCA
Band lengths:
114-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]