RnoALTD0020983-2/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000001336 | Orai1
Description
ORAI calcium release-activated calcium modulator 1 [Source:RGD Symbol;Acc:1311873]
Coordinates
chr12:38981927-38995310:-
Coord C1 exon
chr12:38995296-38995310
Coord A exon
chr12:38995179-38995295
Coord C2 exon
chr12:38981927-38982671
Length
117 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGC
5' ss Score
8.27
3' ss Seq
GTCCCTCCCGCCCCCCCCAGGTA
3' ss Score
11.29
Exon sequences
Seq C1 exon
CAGAGTTACTCCGAG
Seq A exon
GTGATGAGCCTCAACGAGCACTCGATGCAGGCGCTGTCCTGGCGCAAGCTCTACTTGAGCCGCGCCAAGCTCAAAGCCTCCAGCCGAACCTCCGCTCTGCTCTCCGGCTTCGCCATG
Seq C2 exon
GTAGCGATGGTGGAAGTCCAGCTGGACACGGATCATGACTACCCGCCAGGGTTACTCATCGTCTTCAGCGCCTGCACCACAGTGCTGGTGGCCGTGCACCTGTTCGCCCTCATGATCAGTACCTGCATCCTGCCCAACATCGAGGCTGTGAGCAACGTCCACAACCTCAACTCCGTCAAGGAGTCGCCGCACGAGCGCATGCACCGCCACATCGAGCTGGCTTGGGCCTTCTCCACCGTCATCGGGACGCTGCTTTTCCTGGCCGAAGTCGTGCTGCTCTGCTGGGTGAAGTTCTTACCGCTCAAGAGGCAGGCGGGACAGCCAAGCCCCACCAAGCCACCCACCGAACCGGCCGTCGTCGTCGCCAACAGCAGCAACAACGGTGGCATCACCCCGGGTGAGGCGGCTGCCATCGCCTCCACTGCCATCATGGTCCCCTGTGGCCTGGTGTTTATCGTCTTTGCCGTTCACTTCTACCGCTCACTGGTCAGCCATAAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001336-5-7,6-7,7-7-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=NA C2=0.163
Domain overlap (PFAM):
C1:
PF078567=Orai-1=PU(16.5=77.3)
A:
NA
C2:
PF078567=Orai-1=PD(82.5=83.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]