RnoALTD0021045-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000010011 | Osbpl3
Description
oxysterol binding protein-like 3 [Source:RGD Symbol;Acc:1564287]
Coordinates
chr4:80041731-80045138:-
Coord C1 exon
chr4:80045075-80045138
Coord A exon
NA
Coord C2 exon
chr4:80041731-80041809
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATG
5' ss Score
8.99
3' ss Seq
TATTTGATATTTCATTTCAGACG
3' ss Score
6.71
Exon sequences
Seq C1 exon
GTCAGCCACCACCCGCCTATCTCCGCCTGCCACGCCGAGTCCCGGAACTTTGTTTTCTGGCAAG
Seq A exon
NA
Seq C2 exon
ACGTGAGATGGAAAAACAAATTCTGGGGTAAATCCATGGAAATTGTCCCGATTGGTACTACCCATGTGACTCTGCCTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010011-26-33,27-33-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(13.3=100)
A:
NA
C2:
PF0123713=Oxysterol_BP=FE(16.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]