RnoALTD0021093-2/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000010983 | Otog
Description
otogelin [Source:RGD Symbol;Acc:1306610]
Coordinates
chr1:102300214-102301285:+
Coord C1 exon
chr1:102300214-102300492
Coord A exon
chr1:102300493-102300527
Coord C2 exon
chr1:102301168-102301285
Length
35 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
GGAGGAGATTGTCTTTCTAGATG
3' ss Score
1.7
Exon sequences
Seq C1 exon
ACCCTGATGTGGTGTCCCTGGAGGCGGCTGACAGACCCAACTTCTACCTGCATGTCACAGCCAATGGCTCTATAAGGCTGGCAAAATGGCGGCGCGATGAAGCCTTCCATCAGCATGCCTCCTTCTCCCTGCACCGGGGGACATGGCAGGCTGGCCTGGTGGCTCTGGAGTCCCTGGCAAAGCCTGGCTCCTTTCTCCAATCATCAGGCCTTAAGCTGGCTCTGCGGACATATGAACACACAGAGGCATTTCGTGGTGGTGCACTCTTCCGCCTTCTGG
Seq A exon
GTAAGGGTCCGCCCTGGCACCGCTCTGCCTTCTGG
Seq C2 exon
ATGCCAAGCCTTCGGGGGCTGCCTACCCCATCTGTGAGTGGCACTATGATGCCTGCGCTAGCCCCTGTTTCCAAACCTGCCGGGACCCGCAGGCAGCCAGCTGCCAGGATGTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010983-33-33,34-33,35-33-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF052708=AbfB=PD(63.9=97.9)
A:
NA
C2:
PF0182612=TIL=PU(50.0=70.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACACAGAGGCATTTCGTGGTG
R:
GGTTTGGAAACAGGGGCTAGC
Band lengths:
119-154
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]