RnoALTD0021189-3/4 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000008639 | Pabpc1
Description
poly(A) binding protein, cytoplasmic 1 [Source:RGD Symbol;Acc:619838]
Coordinates
chr7:75409581-75410228:-
Coord C1 exon
chr7:75410142-75410228
Coord A exon
chr7:75410132-75410141
Coord C2 exon
chr7:75409581-75409660
Length
10 bp
Sequences
Splice sites
5' ss Seq
TGAGTTCTC
5' ss Score
-20.92
3' ss Seq
TTTTTTTTAAACATTTACAGATT
3' ss Score
8.64
Exon sequences
Seq C1 exon
GTCGATGAAGCTGTAGCTGTACTACAAGCCCACCAAGCGAAAGAGGCTGCCCAGAAAGCAGTGAACAGTGCCACTGGTGTTCCAACT
Seq A exon
GTCTAAGTGA
Seq C2 exon
ATTGATCAGGGACCACGAACAGAAACTCGTGCTTCACCGAAGAAAAATATCTTAAACATCGAAAAATTTAAATATTATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008639-30-26,31-26,32-26,33-26-3/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0065813=PABP=PD(9.7=22.6)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGTACTACAAGCCCACCA
R:
TCTGTTCGTGGTCCCTGATCA
Band lengths:
96-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]