RnoALTD0021552-1/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000000993 | Pcp2
Description
Purkinje cell protein 2 [Source:RGD Symbol;Acc:1306217]
Coordinates
chr12:2173880-2174668:-
Coord C1 exon
chr12:2174568-2174668
Coord A exon
NA
Coord C2 exon
chr12:2173880-2173994
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
CAATCCTGTCTGTCCTTAAGGCA
3' ss Score
5.22
Exon sequences
Seq C1 exon
GTGTGGGGGCCCTGTCAGAAACCAGGAGAAAAGTATAGGAGAAACACAAAATGGATCAGGAAGAAGAAAAGGGAGAAAGAGGCTTAGACCTTCAAGACAAG
Seq A exon
NA
Seq C2 exon
GCAGGTTCACCTGACCAGGAAGGCTTCTTCAACCTGCTGAGCCACGTGCAGGGCGATCGGATGGAGGAACAGCGCTGTTCCTTGCAAGCTGAGCCAGGCCAGACCCCAGAAAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000993-1-0,2-0,3-0-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0218812=GoLoco=WD(100=59.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGGGGCCCTGTCAGAAA
R:
CTTTCTGGGGTCTGGCCTGG
Band lengths:
212-475
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]