RnoALTD0022003-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000000480 | Phf1
Description
PHD finger protein 1 [Source:RGD Symbol;Acc:1303205]
Coordinates
chr20:5529832-5530070:+
Coord C1 exon
chr20:5529832-5529839
Coord A exon
chr20:5529840-5529919
Coord C2 exon
chr20:5530003-5530070
Length
80 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
CATTTACCCTCTTCCTTCAGCTT
3' ss Score
8.96
Exon sequences
Seq C1 exon
CGTTTGCT
Seq A exon
GTAAGAAGAAATATTTCGATTTTGACCGAGAGATCCTCCCCTTCACCTCTGAGAATTGGGACAGTCTGCTCCTGGGGGAG
Seq C2 exon
CTTTCAGACACTCCCAAAGGAGAACGCTCTTCCAAGCTCCTTTCTGCCCTTAACAGCCACAAGGACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000480-11-20,12-20-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.145
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]