RnoALTD0022017-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000018874 | Phf19
Description
PHD finger protein 19 [Source:RGD Symbol;Acc:1310390]
Coordinates
chr3:13960617-13961655:-
Coord C1 exon
chr3:13961570-13961655
Coord A exon
NA
Coord C2 exon
chr3:13960617-13960712
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCT
5' ss Score
8.49
3' ss Seq
CTTCTCTTCCCCCCTCTCAGTGG
3' ss Score
9.24
Exon sequences
Seq C1 exon
AGTGACTTCACCTCAGCCTGGAGCACGGACCACCACCTGGCCAGCATATTCGACTTTACACTGGATGAAATTCAGAGTTTAAAAAG
Seq A exon
NA
Seq C2 exon
TGGCAGCTCAGGCCAGACCTTCTTCTCAGACGTGGATTCTACCGATGCTGCTAGCACCTCAGGCTCTGCGTCCACCAGCCTCTCCCAGGACTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018874-17-16,18-16-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.667
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]