RnoALTD0022380-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000011317 | Pkn2
Description
protein kinase N2 [Source:RGD Symbol;Acc:620146]
Coordinates
chr2:248770225-248771346:-
Coord C1 exon
chr2:248771209-248771346
Coord A exon
NA
Coord C2 exon
chr2:248770225-248770334
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAAA
5' ss Score
1.18
3' ss Seq
ATTTACAATTGTAATTACAGATG
3' ss Score
4.99
Exon sequences
Seq C1 exon
GTACTTTGGAAGTTCGTCTCATGGGGTGCCAAGATATCCTGGAGAATGTCCCTGGACGGTCAAAAGCGACATCCGTAGCACTGCCTGGATGGAGTCCAAGTGAAAACAGATCATCGTTTATGAGCAGAACTAGTAAAA
Seq A exon
NA
Seq C2 exon
ATGATGTTTGTGCTGTTTTGAAGCTAGATAATACTGTGGTTGGTCAAACTATCTGGAAGCCCATTTCCAATCAGTCGTGGGACCAGAAGTTTACACTGGAACTAGACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011317-27-14,28-14-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.255 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGCACTGCCTGGATGGAGTC
R:
TGGTCCCACGACTGATTGGAA
Band lengths:
148-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]