RnoALTD0023005-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000061510 | Pom121l2
Description
POM121 transmembrane nucleoporin-like 2 [Source:RGD Symbol;Acc:1594366]
Coordinates
chr17:44588045-44594857:-
Coord C1 exon
chr17:44594757-44594857
Coord A exon
NA
Coord C2 exon
chr17:44588045-44588482
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCTG
5' ss Score
4.87
3' ss Seq
TTAATCCATTTTATATTTAGGGA
3' ss Score
8.06
Exon sequences
Seq C1 exon
CGCCTCCTGAGCGGAGACCACGGCCCTTGTTCCCAGCCTCAAGAGTGGTGAACTCCGCGGGACCTTCAGAGGAGCCACCAGGCCCCTGTGGAAAGGAACAG
Seq A exon
NA
Seq C2 exon
GGAAAAGCATCTGTTTGGAAGATGGGAGCTGGACCTCAGAGGCCAAGAAAGATGTCTTGATTGGTGACAAGTCTCTTCTGTGACTCTCTGCAGCAACTCGGAGAAGAATACAAGACTTTCTATCATCTATTCAACTTCCTTTCATGTGTTATCTTGAGTAGGTGGACAAGTCTGATACTACCTGAATCTAGGAGTGGAGCAGAGTCTACTCCCTGGAATCCCTGGAAATAAATAAAAGGGACCAGGCTATTTCTGGGACATTAATGGGGAAGGGAAGGTAGTTAACACTTTTAGTGGGGAAATCAGCATATTCAGGGTGAATGATAATCCATTTACAAATACACAAATATGAAGAAACAAACAGGAATCAAACTATTCTCTTTCTGTGAGTGTGTGTATGTATGTGTTCCTAAGCATTGAATTAAAAACTTATGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000061510-1-0,2-0-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.895
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTTCAGAGGAGCCACCAG
R:
CTTCTCCGAGTTGCTGCAGAG
Band lengths:
147-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]