RnoALTD0023411-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000007683 | Prdm13
Description
PR/SET domain 13 [Source:RGD Symbol;Acc:1589883]
Coordinates
chr5:35829756-35831647:-
Coord C1 exon
chr5:35831470-35831647
Coord A exon
chr5:35831426-35831469
Coord C2 exon
chr5:35829756-35829887
Length
44 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTA
5' ss Score
7.52
3' ss Seq
GACCACTGCTTGTGTTGCAGGTG
3' ss Score
9.44
Exon sequences
Seq C1 exon
GGCTGCTCCTGGTTCTGTCACTTGCGCCCGGTGGAGGACCCCGTGAGCCCCAGCGTCTGCCTGGCGGCGGTGGCAACAATGCACGGAACTTCCCGCACTTCGGCCACCAGCGTGAACGCTGACTGCTGCATCCCGGCTGGCTTGCGCCTTGGGCCGGTGCCTGGCACCTTCAAGCTGG
Seq A exon
GCAAGTACCTGTCAGATCGCAGGGAACCAGGGCCGAAGAAAAAG
Seq C2 exon
GTGCGCATGGTGAGAGGGGAGCTGGTGGACGAGTCAGGGGGCTCTCCCCTGGAGTGGATAGGGTTAATCCGGGCAGCCAGGAATCCCCAGGAACAGACTCTGGAAGCTATTGCAGACCTACCAGGAGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007683-1-1,2-1-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.108 A=NA C2=0.182
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0085623=SET=PU(44.7=38.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACGCTGACTGCTGCATC
R:
TGCCCGGATTAACCCTATCCA
Band lengths:
141-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]