RnoALTD0023971-3/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000015550 | Ptgds
Description
prostaglandin D2 synthase [Source:RGD Symbol;Acc:3433]
Coordinates
chr3:2686123-2686753:-
Coord C1 exon
chr3:2686728-2686753
Coord A exon
chr3:2686698-2686727
Coord C2 exon
chr3:2686123-2686243
Length
30 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
3' ss Seq
GCTCTTGTTCTTCTGTGCAGGTG
3' ss Score
10.18
Exon sequences
Seq C1 exon
ATAAGTGCATTCAAGAGTAAACACAG
Seq A exon
GTGAGAGAAGTCAGTCACAGGTAACACATG
Seq C2 exon
GTGATGTGGCCTCAGGACTCCCGTGCTCTGTCACTCTTGAGACCCAAGCCCTGGCTCCCCAAAGACCTTCTCCGCCCTCCAGCTTTGCCTTGGTGGAGAAATAAAATCCAAAGCAAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015550-12-14,13-14,14-14-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0006118=Lipocalin=PD(0.1=0.0)
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGCATTCAAGAGTAAACACAG
R:
TTCTCCACCAAGGCAAAGCTG
Band lengths:
123-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]