RnoALTD0024651-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000040108 | RGD1565355
Description
similar to fatty acid translocase/CD36 [Source:RGD Symbol;Acc:1565355]
Coordinates
chr4:14003178-14005725:+
Coord C1 exon
chr4:14003178-14003278
Coord A exon
chr4:14003279-14003288
Coord C2 exon
chr4:14005454-14005725
Length
10 bp
Sequences
Splice sites
5' ss Seq
AAGGTTGTT
5' ss Score
2.39
3' ss Seq
ATCTTTTCATAAATCCTCAGCTT
3' ss Score
5.74
Exon sequences
Seq C1 exon
GCTTTACAGTGGACTGATCTGATAGTTTAGAAAAGAAATCAAGCACTGGAGGATAGCAAAACAACTTCTCCTGGGAAGAAAAACAGAATGACATGCTCCAG
Seq A exon
GTCTCCAAAG
Seq C2 exon
CTTTGCTAATATAGACTACGACCTTCTGATGTAACTGATAAACAAAACCAAAACATTAATAATGAAGACATAGAAAGCATCTGCACAGTTTTCCTGTACTGTTCCTATAGACATTGGAATAAGCCGCTGACAGAATAAGGATTCAAACAAGCAATAGAGGTCCTTAAGAGAGCAGCATAAATGAGGATGGGGGCAGAGTCGTTTGCTCCCCATCCTGATCAAATGTGTGGCTTCCTTTTACAATGCTAGAGGACTTCATTGGACAATGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000040108-2-1,3-1-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGCACTGGAGGATAGCAA
R:
TCAGTTACATCAGAAGGTCGTAGT
Band lengths:
101-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]