RnoALTD0025086-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000001374 | Rasal1
Description
RAS protein activator like 1 [Source:RGD Symbol;Acc:1311820]
Coordinates
chr12:41420607-41421759:-
Coord C1 exon
chr12:41421645-41421759
Coord A exon
chr12:41421641-41421644
Coord C2 exon
chr12:41420607-41420744
Length
4 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
3' ss Seq
CTGTCCCTGGCCGCCCACAGGTT
3' ss Score
9.52
Exon sequences
Seq C1 exon
GCTTTCTGCTGAAGCGCAAGGAGGAGCCTGCAAGCCTGGCCACCCGCTTTGCCTTCAAGAAGCGCTACTTCCGACTGAGTGGGCGGGACCTCTCCTACTCTAAGACTCCTGAGTG
Seq A exon
GCAG
Seq C2 exon
GTTCACTCATCCATCCCGTTGTCCTGCATCCGGGCTGTGGAGCGTGTGGATGAGGGTGCCTTCCAACTGCCACATGTCATGCAGGTGGTGACACAGGATGGCACCGGGGCATCACACACCACCTACCTCCAGTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001374-24-32,25-32-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=PU(40.2=74.1)
A:
NA
C2:
PF0016924=PH=FE(42.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCGCTTTGCCTTCAAGAAG
R:
AGGACAACGGGATGGATGAGT
Band lengths:
99-103
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]