RnoALTD0025233-1/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000005387 | Rbm3
Description
RNA binding motif protein 3 [Source:RGD Symbol;Acc:620145]
Coordinates
chrX:15100903-15101421:+
Coord C1 exon
chrX:15100903-15100966
Coord A exon
NA
Coord C2 exon
chrX:15101345-15101421
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGGGTATGG
5' ss Score
6.23
3' ss Seq
ACATCGCTTTTTCCCAGAAGCCA
3' ss Score
0.84
Exon sequences
Seq C1 exon
GTGGTGGAGACCAGGGATATGGAAGTGGAAGATACGACAGCCGACCTGGAGGCTATGGATATGG
Seq A exon
NA
Seq C2 exon
CCAGGGTGGCTATGACCGCTACTCAGGAGGAAATTACAGAGACAATTATGACAACTGAGATGGGGCATGCACACAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005387-16-7,17-7,18-7-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGAAGATACGACAGCCGA
R:
ATTGTGTGCATGCCCCATCTC
Band lengths:
118-144
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]