RnoALTD0025234-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000005387 | Rbm3
Description
RNA binding motif protein 3 [Source:RGD Symbol;Acc:620145]
Coordinates
chrX:15101349-15102340:+
Coord C1 exon
chrX:15101349-15101421
Coord A exon
NA
Coord C2 exon
chrX:15101746-15102340
Length
0 bp
Sequences
Splice sites
5' ss Seq
AATGTAGGT
5' ss Score
5.12
3' ss Seq
ACCGTTCTTACTGTTCTCAGATA
3' ss Score
9.21
Exon sequences
Seq C1 exon
GGTGGCTATGACCGCTACTCAGGAGGAAATTACAGAGACAATTATGACAACTGAGATGGGGCATGCACACAAT
Seq A exon
NA
Seq C2 exon
ATACACAAGGAATAACACTTCTGATCCAGGATCGTCCTTGCAAATTGCTGTATTTATAAAGATTTTTGGAGCTGCGCTGAAACGTCTGTTTTAGTACATCAAGTTCTATTTTTGAATTGAGCTCCCAAGGTAGTTTGTTAAAGAACTTTAAGAAAGCTCCATGTGTTCTTTAAACACTTTTCCCCCTTTTAAAGACAAATTTTAAGACATTTGTTAACGGTCCCAATATTTTTCCTTTTATCAGAATTTTTGTTGAGGCACTCAGGATTATTGTTGCTGGCCAAGAGAAAAAAGTGGCCAGGATAAATCAAGTTTTTTAAATTAATGTGTATTTTGGGACATTAAAAATTTGTAAATGATGTTTTCTCATGGCCAGAAAGTGATTTCTGAATGTACCTATGAACAATCTACATCAAGATCATGATTACTAGAGATGTTTTTTATTAAAGATCACTGTCCTGATTATATAGAAGAGCTTCTTTAAAATGTTTGTGAATGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005387-19-9,20-9-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTATGACCGCTACTCAGGA
R:
GGACGATCCTGGATCAGAAGTG
Band lengths:
107-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]