RnoALTD0025789-1/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000033378 | Rnf123
Description
ring finger protein 123 [Source:RGD Symbol;Acc:2301394]
Coordinates
chr8:116841205-116841774:-
Coord C1 exon
chr8:116841668-116841774
Coord A exon
NA
Coord C2 exon
chr8:116841205-116841403
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGG
5' ss Score
9.13
3' ss Seq
GACCTCTTTCTCTACCACAGCGT
3' ss Score
8.77
Exon sequences
Seq C1 exon
ATGACCTTGCTTCCAAAGCCAATATCGTGATTGATCCCCTGGAGCTCCAGGCAGCCACCATGGATGACCTGGATGAGGATGAAGAGCCGGCCCCCACAGCAGCCCAG
Seq A exon
NA
Seq C2 exon
CGTCCCGTGCAAGCACTGGCCATAGGAGGGGCCCTGCCCCTGCCCCGGCCTGGCTGGCTAAGTTCTCCAACCCTGGGCCGAGCCAACCGTTTCCTCAGCACAGCAGCCGTGAGCCTCATGACCCCACGGCGGCTTCTGAGCACCATGGAGAAAGTAAAAGTTCGCTCCCTGAATGTGGAACAGAGGACCCGTGAGGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033378-41-44,42-44,44-44-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.467 A=NA C2=0.176
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATTGATCCCCTGGAGCTCCA
R:
TGGAGAACTTAGCCAGCCAGG
Band lengths:
148-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]