RnoALTD0026004-1/6 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000053405 | Rpap3
Description
RNA polymerase II associated protein 3 [Source:RGD Symbol;Acc:1303036]
Coordinates
chr7:139194859-139196463:-
Coord C1 exon
chr7:139196363-139196463
Coord A exon
NA
Coord C2 exon
chr7:139194859-139195017
Length
0 bp
Sequences
Splice sites
5' ss Seq
CCGGTAAGG
5' ss Score
10.19
3' ss Seq
GTGTGCTCCCGAGTTTGCAGGGC
3' ss Score
2.12
Exon sequences
Seq C1 exon
GAGCCGAACCTTCTGCGCACGCTCGAGCGGAGCGCGGGGCCTTGTGGGAAGGCGCAGACCTCCGGCGGTGGTGTAGGACGCCGTGCGTCTCCCTGGAGCCG
Seq A exon
NA
Seq C2 exon
GGCGCGATGACCTCGACAAGTAAGGCGGTTGAACTGCAGCTCCAGGTGAAGCACAATGCGGAGGAACTGCAGGATTTCATGAGGGACTTGGAGCACTGGGAAAAGACTATGAGGCAGAAGGATCTGGAGCTCAGAAGGCAGAGTGGCGTTCCCGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053405-0-5,1-5,2-5,3-5,4-5,5-5-1/6
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.843
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGTGGGAAGGCGCAGAC
R:
ATTGTGCTTCACCTGGAGCTG
Band lengths:
118-143
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]