RnoALTD0027179-1/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000025892 | Set
Description
SET nuclear proto-oncogene [Source:RGD Symbol;Acc:1307467]
Coordinates
chr3:8637422-8645407:+
Coord C1 exon
chr3:8637422-8643151
Coord A exon
NA
Coord C2 exon
chr3:8644839-8645407
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAC
5' ss Score
5.56
3' ss Seq
GACTTCCCTGCCCTTTGCAGCCT
3' ss Score
9.27
Exon sequences
Seq C1 exon
GGACATCCTTATGGTAAAATCACAACCTTGACTCCAGCTGAGTCAGAAAAAGCGTTTCACACGAGTCTGAGTTGGTTCGTATCTTACTTGGATCTGACCATAATTTGGGTCAAGGCTTACTCCGTGACCAAGCCAGGCCCCAGCGCACGCTGCGGGCCATGCGGGAGCAGAGATGGCCCTCGGCTTTCCTATCTCTAGGAAGAACAGTTGCGGTGCAAAGAGTGAGCGTGCACCGCGGGAAAGGAGCCTCGGATCCGCGGAGCTGAACTCCGGTGTGGGGTCCGGGACGCTGCTCCCGCGAGGCCGGGAGGGGGCGCTGCTCCCCAGCACCTGCCGGGCGCGCGAGTCTCCGGAGGGGGCGCCCGTCCGCGTGTCCCGCGCCACTTCCCGGGAAGTTTCAAGTTTGAAAGTCAGGCGCTGAGGCCCGGGCTTCCGGAACCATAGTGGAGGAGAGGACTGGCGGGCAAGGCGCCATGGAGTCGGAGGGGGCGGCGCGCCAG
Seq A exon
NA
Seq C2 exon
CCTAGGACTGGCCAGAGAGCCCCCGAGGATGAGAAAGAGATGATCCGTCGAGCTATCCAGAAGGAGTTGAAGATCAAGGAGGGCATGGAGAACATGCGTCGTGTGGCCACAGACCGACGCCACCTGGGCCATGTGCAGCAGCTGCTCCGGGCCTCCAACCGCCGCCTGGAGCAGCTGCACGGCGAGCTTCGGGAGCTGCATGCCCAAGTTTTGCTGCCAGCCCCAGCCCACGGTGAGTGAGGAGTCTGAACAGACCCCAGGGACCAGGAGGCACAGGATCCTGGCCTTGGCTCTGACCACTGGATCAGAGCCCCTGACCGCCCTGTATCTTCTATGTTGCCTATATGGACATGAAGAAAACACTGCTTTCACAGAGGTCTGAACTCTAAGGTGGGATCACGCACCCCCTACCTTCTGTTGCAGAGCCAATGACCTCAGGACCCCAGCCACGGGCAGAGCAGTCGAGGGCTCGGCTCCTGGAGGCCTTACATAGGCAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025892-23-18,24-18,25-18-1/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.724
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0095613=NAP=PD(17.5=37.2),PF0218511=HR1=WD(100=85.9)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAGTGGAGGAGAGGACTGGC
R:
CAGACTCCTCACTCACCGTGG
Band lengths:
308-568
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]