RnoALTD0027395-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000011752 | Sh3d19
Description
SH3 domain containing 19 [Source:RGD Symbol;Acc:1304885]
Coordinates
chr2:185392280-185394131:+
Coord C1 exon
chr2:185392280-185392433
Coord A exon
chr2:185392434-185392442
Coord C2 exon
chr2:185393142-185394131
Length
9 bp
Sequences
Splice sites
5' ss Seq
CAGGCAATT
5' ss Score
0.8
3' ss Seq
TCTTCCTTGGCTGCCCTCAGCAC
3' ss Score
6.4
Exon sequences
Seq C1 exon
CTCCCACCCTCCTACGAACAAGTGATAAAAGAAATCAACCAAGTCCAGGTGAACTCCACAAATAACAATAATGCTGCCGCCACTCCAAGGAGCACTATTACTTCTGCAACCCAGACCGACTTCCCAGAAGAAATAGACGGCGATCCACCTCCAA
Seq A exon
GTAATACAG
Seq C2 exon
CACTACAGGCGCCTCTCAAGCCTCTCCAGTCTTCACCAGCAGCCTCCGCTGGCAATCTCCCCCCAGGGGTGGCACCTTTAATAGTCTTTGATATTTGTGAAGAGCAGAATTGTCCTGAAAAACCCAGTGCTACAAGATGTCCAGTGCCAAGACCAAGATCAAAAACCAACCTCAGACCAGTAGCTAGGGACGCTCACAGCAAAGAGAAAAACGTCCCGAAAAGTCCAGTGACTCCCAGAGAAGACTGGCCGCCCCAGTGTCTGCTGGACAGCACCTGCAATTTAGATAGTCAGTCAGTGATGAACATTATGAACACAGAACAAAGCCAAAACACTATTATTTCCAGGATCAAAGCATTTGAGGGTCAGACAAGCACAGAAATCCCGGGACCGCCCAAGAAACCTGAGATTATTCCCCGCACTGTTCCCCCGAAGCCTGCTGTTTCCTCAGGGAAACCCTTGGTGGCACCCAAGCCAGCTGCTAACAGAGCTTCTGGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011752-17-18,18-18-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACTCCAAGGAGCACTATT
R:
AGACTGGAGAGGCTTGAGAGG
Band lengths:
108-117
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]