RnoALTD0027855-3/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000048853 | Slc25a41
Description
solute carrier family 25, member 41 [Source:RGD Symbol;Acc:1588585]
Coordinates
chr9:10004829-10006469:+
Coord C1 exon
chr9:10004829-10004929
Coord A exon
chr9:10004930-10005345
Coord C2 exon
chr9:10006314-10006469
Length
416 bp
Sequences
Splice sites
5' ss Seq
TTAGTGAGT
5' ss Score
5.79
3' ss Seq
AGTGGCCGTTGTTCTTGCAGGTT
3' ss Score
10.77
Exon sequences
Seq C1 exon
ATAACCAGCCACTCTCAACTGGGAACTGGATAGACGCTCCAGGAAACGCTGAGACTGGGAGCCTAATCCTTCAGGCGGCAACTATGGGAGTCCATCTGGAG
Seq A exon
GTAACTCCGGACCCTTGTTCAAGGATCCAGACCTTGCTTAAGAGGGCCAAGGCCTTATTTAGGAAAGCTCTACCCTGCCCCACCCCCACCCGTCTCCACCCTACCCCAGCACTATCTGAAGCCTGGAACCCAGGGTGCACACACATATGTGAGTATGTTTGGACACATGGGTCAGAACAACCCTGAGCATTCTCTATTACAGCAGGTAAGTCTGGAGAGTGAGTTGGCGCAAGCTGAAGCAAAGGGAAACAGCTTCGAGGCCCTTATGGTATGGAACACCTTCTCCCTCCAGGCAGAGTAGAATAGCCTACACTGAGACCATGTGTGAGACCATGTGGTGCTTCATACCTGTTACCCCGGCACTCAGGAGGCTGCAGGCAAGACATCAAAAGTTCGAAGTCATCCTCAACTGTTTA
Seq C2 exon
GTTCTGGACACAGGAGAGCAGCTGATGGTTCCTGGGGATGTCTTGGAAGAGGAAAACAAGGGGACCCTGTGGAAGTTTCTGCTCTCCGGAGCCATGGCTGGGGCAGTGTCTCGCACAGGGACAGCACCTCTGGACAGAGCTAGGGTGTACATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048853-3-0,4-0,5-0-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.038
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0015322=Mito_carr=PU(35.1=63.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAACCAGCCACTCTCAACTG
R:
TGCATGTACACCCTAGCTCTGT
Band lengths:
256-672
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]