RnoALTD0027918-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000005900 | Slc2a6
Description
solute carrier family 2 member 6 [Source:RGD Symbol;Acc:1309317]
Coordinates
chr3:5571574-5572521:-
Coord C1 exon
chr3:5572422-5572521
Coord A exon
NA
Coord C2 exon
chr3:5571574-5571782
Length
0 bp
Sequences
Splice sites
5' ss Seq
TTGGCAAGT
5' ss Score
2.72
3' ss Seq
ACCGAAGCCTCTCTCACCAGGTC
3' ss Score
6.49
Exon sequences
Seq C1 exon
GTGTACGTGTCTGAGATTGCACCCCCGGGTGTTCGCGGGGCCCTGGGGGCCACGCCGCAGCTCATGGCCGTGTTTGGATCCCTGTCTCTCTATGCCCTTG
Seq A exon
NA
Seq C2 exon
GTCTTCTGCTGCCTTGGCGATGGCTTGCCGTGGCCGGGGAGGGGCCTGTTCTGGTCATGATCCTGCTGCTTAGCTTCATGCCCAACTCGCCTCGCTTCCTACTGTCTAAGAGCCGGGATGAGGAAGCACTGCAGGCGCTGATCTGGCTGCGAGCGGACTCTGAGGTCCACTGGGAGTTTGAGCAGATCCAGGACAACGTGCGGAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005900-5-3,7-3-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0008319=Sugar_tr=PU(21.6=94.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTCATGGCCGTGTTTGGAT
R:
CACGTTGTCCTGGATCTGCTC
Band lengths:
242-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]