RnoALTD0028124-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000020951 | Slc4a1
Description
solute carrier family 4 member 1 [Source:RGD Symbol;Acc:3710]
Coordinates
chr10:90307229-90308379:-
Coord C1 exon
chr10:90307747-90308379
Coord A exon
chr10:90307672-90307746
Coord C2 exon
chr10:90307229-90307302
Length
75 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
ATTGGCTCTTGGGTTTTCAGCTC
3' ss Score
7.66
Exon sequences
Seq C1 exon
CCAGGCCTCCTGCCTCCGCCAGAAGAGCTGCTGGGTCCCCATAGGGACAGAAGGGACCCAGGCCTTCCCCTCTCCACAGCTCCGGTCCCAGCCCTGGGGCCAGTTCTCCCCACAATCTTGGCTGATTGAAGGATAAACAGTGTTTTGTTTGAAATGATCACAGGAGGTGATTGGGGGGCGGGAGAGGGGAAGGAGGCTGGGTCCCTTTCACATGTGACAGGGCAGTCAGGTATGTCTGGGACAAGGGCACAGACCCAGCTGTTAGCCTGTCTGTCCCATATCAGTATTGAGGCCAAGCAGTAGGCCTGTTGGCTGAACGTCATTCAGTCTAGACGGCTGAAGATGCAGAGAAAGGAGAGAAAGCTGTGGGGACCCCTGAAGCAGAGACCCCAGGAGTCCATACCACCTTCCTTGGCCTGCCCAAGGTCTTAGATGGGGAGCCTGAGGTGGGGACCTGTTTACTGTCAACAGGGCTTAAGTGTTAGTGATTAGATTTGAAG
Seq A exon
GTAAGAGGTCCCCTTGGGGAAGGAGGGGTTGGGGTTGCGGGATATAAGGGACTCACCCCATCTGACTGGTGTATG
Seq C2 exon
CTCTTCCCACAGAGCAAACAGCCACAGACTACATCCCCACCAGTACCTCCACATCGCACCCAAGCTCCAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020951-7-11,8-11-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.800
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGAGAGAAAGCTGTGGGGA
R:
TCTGTGGCTGTTTGCTCTGTG
Band lengths:
177-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]