RnoALTD0028133-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000014347 | Slc4a2
Description
solute carrier family 4 member 2 [Source:RGD Symbol;Acc:3711]
Coordinates
chr4:7278920-7282462:-
Coord C1 exon
chr4:7282362-7282462
Coord A exon
NA
Coord C2 exon
chr4:7278920-7279033
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
3' ss Seq
TGACCCTTTCCCCCACTCAGGTT
3' ss Score
9.6
Exon sequences
Seq C1 exon
CCTGGTGACCCCAGGACTGATTGGGGAATGATTCTGAGCGATGTCTTACTGCTGATGACCTCACAGGGACCAGCTGACCACAGGGCTGGGCAGCGAGACAG
Seq A exon
NA
Seq C2 exon
GTTATGCCTCCACCTTGTTGCCCTGAAAGCCGAAGCGACAGTGAGAAGGGCTAAGATTTGGCCATGAGCAGCGCCCCCAGGCGCCCCGCCTCGGGCGCAGATTCTTTGCACACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014347-0-0,1-0-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGACCCCAGGACTGATTG
R:
CGTGTGCAAAGAATCTGCGC
Band lengths:
213-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]