RnoALTD0028136-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000014347 | Slc4a2
Description
solute carrier family 4 member 2 [Source:RGD Symbol;Acc:3711]
Coordinates
chr4:7270996-7271407:-
Coord C1 exon
chr4:7271254-7271407
Coord A exon
NA
Coord C2 exon
chr4:7270996-7271110
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGAT
5' ss Score
1.48
3' ss Seq
CCTCTCACCCCCATCCCCAGCGT
3' ss Score
6.55
Exon sequences
Seq C1 exon
CCACCCAAGTGATGAGAAAGAATTCTCCTTCCCCCGGAACATCTCAGCGGGCTCTCTGGGCTCTCTCCTGGGGCATCACCACGCCCAGGGGACTGAGAGTGATCCTCACGTCACTGAGCCTCTCATCGGTGGTGTTCCTGAGACCCGGCTGGAG
Seq A exon
NA
Seq C2 exon
CGTGAGCTGCCGCCCCCAGCCCCACCTGCAGGTATTACCCGCTCCAAGTCCAAGCATGAGCTGAAGCTGCTGGAGAAGATCCCTGAGAATGCAGAGGCCACAGTGGTCCTCGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014347-27-11,28-11-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.714 A=NA C2=0.462
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(20.4=100)
A:
NA
C2:
PF075658=Band_3_cyto=FE(14.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCGGTGGTGTTCCTGAGA
R:
CTCATGCTTGGACTTGGAGCG
Band lengths:
92-104
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]