RnoALTD0028140-3/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000020138 | Slc4a3
Description
solute carrier family 4 member 3 [Source:RGD Symbol;Acc:3712]
Coordinates
chr9:82742228-82743114:+
Coord C1 exon
chr9:82742228-82742328
Coord A exon
chr9:82742329-82742813
Coord C2 exon
chr9:82742972-82743114
Length
485 bp
Sequences
Splice sites
5' ss Seq
GAGGTACTT
5' ss Score
7.82
3' ss Seq
CCCCGCCCTCCTTCCCCAAGGCT
3' ss Score
8.45
Exon sequences
Seq C1 exon
ACTGTGCCAAGGTCAAATGTTGGGTGGCACCCAGCGCCAGAAGCCAGGCCTTTGAAGGGCATCAGCTGAACTGGAGGTGTTGATGGCAAATGCTTTCAGGG
Seq A exon
GTCTGTGATCTTGGAAACGGGCCCAAGCTGGAGAGGCTTGTTTGCGCGAAGAGGGTCTCCTCCAGGGCTCCTGAGGGAAAGGGAGGGGTGGCTAAAAGCAAGGTGGAGGAGTGCGTTTGAGGGATTGTGGGAATTTAGGGCCGTGCACCCGCCCCTCCTCCCCCCGCAATGCGTGGGGCGCCTGGAAAGGGGTCTTGCGGGCAGGTGGGATCCTGCGGGGACCCGAGCGCCGGGCCCATGCTGGCCCAGTCGGGGTAAGTCAGGAATCGTCCACTCCCATTGTGCGGCCGGGCGGCGGCCGGCTGGCAGAGCCGAGCTCTAGGAGGTGGAGCCGTGGACTGCGGGCTCCGGCGCCTGCGTCCGACCTGCCCGGCTCTGCGCGGCGAGAGGCCGGACGGGAACCCGGCAGCCGCGCCCCGGCGCTAGCGGGGAGGGACATGGGGCGCGGCGGTTCTCCCAAGCCCCGCAGGTTCCGGAGCCCGGAG
Seq C2 exon
GCTCCCCAAGAGGTCTCCGCAGCGCCCCCTTCTTCTCACCCAGGATTTGGGTCCCGTAGTGACTGAGAGACTCCTAAGTCTTCAGCCCAACCATGGCTAATGGGGTGATCCCACCGCCCGGGGGCGCCTCCCCCCTACCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020138-0-0,1-0,2-0-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCAAGGTCAAATGTTGGGT
R:
GGATCACCCCATTAGCCATG
Band lengths:
208-693
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]