RnoALTD0029383-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000005903 | St14
Description
suppression of tumorigenicity 14 [Source:RGD Symbol;Acc:69288]
Coordinates
chr8:32240133-32241168:-
Coord C1 exon
chr8:32241032-32241168
Coord A exon
chr8:32240819-32241031
Coord C2 exon
chr8:32240133-32240737
Length
213 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
3' ss Seq
AGGATTCGTTTTTTGCGCAGGGT
3' ss Score
5.62
Exon sequences
Seq C1 exon
GAACTGGAGCACTGATCCTGCAGAAGGGAGAGATCCGGGTCATCAACCAGACCACCTGTGAGGAACTCTTGCCGCAGCAGATCACCCCACGAATGATGTGTGTGGGTTTCCTCAGTGGGGGTGTGGACTCCTGCCAG
Seq A exon
GTGCGTGGCCTTACAGGGGAGAGAGGCAGAGCTGGAAGGGGAGGGATCTTAAAAGGCTGGGGAAAGGCCGGACCTGGGAGAGGAAGGGCAGTGCAGAATGCAAAGGGAAGGGGCGGGGCTAGGGAAAGAGAAAGGCGGGGCGGGGGAAGGGGAGAAGGAAGCTAACAAGGCTGGAGCTGGGGATCGGTGGGGCTGGGGAGAGCCTGGGCAGAG
Seq C2 exon
GGTGATTCCGGTGGCCCCTTGTCCAGTGTGGAGAAAGATGGGCGAATCTTCCAGGCTGGTGTGGTGAGCTGGGGTGAAGGCTGCGCTCAGAGGAACAAGCCAGGCGTGTACACAAGGATCCCTGAAGTTCGGGACTGGATCAAAGAGCAAACTGGGGTATAGAAGCATGGACAGACAACCCACCATGAACTCGCAAAGGGATGCCCCCCACGCGTACCTGGATACAGCAGAGGATCGCTGAGGACATTTGTGCTGTGGCCTCTCCCCCACATCCCAGACTGTGAACTGCTTCCCTAGGACTCAGAATCCTTCCCTGAGCTTCCAAAGTGGGACCCCTCAGGAGTTGGCCAGAGATCTTCTGTGCTGGTGGCCCAGCCCGGGGTGGGGCAAGGATTTGATGGCAGCCTTCCCCTCTAACCCTGAACTGGGTAAAGACGATGCTTTCCTGGAGAACTGCTTCCAGACTCTAAAGGAAAACTATCGTCGCGCTCCTGGGGGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005903-25-18,26-18-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.075
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(19.1=100)
A:
NA
C2:
PF0008921=Trypsin=PD(19.6=85.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCAGACCACCTGTGAGGAA
R:
TCCCTTTGCGAGTTCATGGTG
Band lengths:
294-507
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]