RnoALTD0029410-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000001823 | St6gal1
Description
ST6 beta-galactoside alpha-2,6-sialyltransferase 1 [Source:RGD Symbol;Acc:3676]
Coordinates
chr11:80933863-80936524:-
Coord C1 exon
chr11:80936401-80936524
Coord A exon
NA
Coord C2 exon
chr11:80933863-80933961
Length
0 bp
Sequences
Splice sites
5' ss Seq
CTGGTATGG
5' ss Score
7.13
3' ss Seq
TTTTCTCTTTCTCACTGTAGTTA
3' ss Score
9.13
Exon sequences
Seq C1 exon
CTCAAGGGGCCTCTGGGTTCTATTTCCAAAGTTCTCGGTGTGTTCCGTAATACTTACGTTACATCTCTCGGGTGTGGAGCTAGGAATCTCCAGTAAGAGAGAACATGCGATATTTGTTGTTCTG
Seq A exon
NA
Seq C2 exon
TTAGTCACCACAGAAAAGCGCTTCCTCAAGGACAGTTTGTACACCGAAGGAATCCTAATTGTATGGGACCCATCCGTGTATCATGCAGATATCCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001823-8-14,9-14-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0077713=Glyco_transf_29=FE(12.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCTCTCGGGTGTGGAGCTA
R:
CCTTCGGTGTACAAACTGTCCT
Band lengths:
113-132
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]