RnoALTD0029418-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000046984 | St6galnac6
Description
ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 6 [Source:RGD Symbol;Acc:1303196]
Coordinates
chr3:11629589-11630867:+
Coord C1 exon
chr3:11629589-11629641
Coord A exon
NA
Coord C2 exon
chr3:11630777-11630867
Length
0 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGT
5' ss Score
9.07
3' ss Seq
CCCTTTCTGGTGGCTTGCAGGTG
3' ss Score
10.81
Exon sequences
Seq C1 exon
ATGAGGAAACTGAGGCTCAGAGAGTCACATGGCTTGCTCGAGGCCCCCCAGCA
Seq A exon
NA
Seq C2 exon
GTGTGACCCCACAACCTTGCCCCCCGGGCCACCTGCAGGACGCTGGCCTCTACCCTTCAGCAGACGCCGCCGAGAGATGAGTAGCAACAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000046984-1-1,2-1-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.600
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGCTCAGAGAGTCACATGG
R:
GTTGCTACTCATCTCTCGGCG
Band lengths:
130-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]