RnoALTD0030090-2/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000025394 | Tanc1
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 [Source:RGD Symbol;Acc:1302949]
Coordinates
chr3:45683972-45718683:+
Coord C1 exon
chr3:45683972-45684072
Coord A exon
chr3:45684073-45684076
Coord C2 exon
chr3:45718577-45718683
Length
4 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
TTGTCCCCTGTTCCTTGTAGGAG
3' ss Score
9.24
Exon sequences
Seq C1 exon
TCGGGAGCCGCAGGAGCCGCAGCCGCCGAGTGCCCAGCCCGCCGCGCTCTGAGGCCCGGCCCCCGGGGTGGGAACCGCGCCGAAAGCTGGAAACTTTCCTG
Seq A exon
GCAG
Seq C2 exon
GAGCTGAGTGTTGGGCACGACGTACAGGAAAAGGACAGGAGAGAGAACTGAGACTTAAGGACCACCGCGCAGAGTTTCCTCTGTGAACGAGAAGATAACAGAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025394-1-1,2-1,3-1-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCGAAAGCTGGAAACTTTC
R:
GCGGTGGTCCTTAAGTCTCAG
Band lengths:
92-96
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]