RnoALTD0030097-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000052840 | Tanc2
Description
tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 [Source:RGD Symbol;Acc:1309285]
Coordinates
chr10:93811505-93841450:+
Coord C1 exon
chr10:93811505-93811605
Coord A exon
NA
Coord C2 exon
chr10:93841361-93841450
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
TTACCTGCTTTCTTTTGTAGTTT
3' ss Score
10.35
Exon sequences
Seq C1 exon
GCGGATCCTCCGTGGGGCGTCCGCGGGCCGTGCGGTCCTCACCGGAGACCACTGGCACGCGGGCTTGACCCCGAGGTGCGCCGCGCCCCTCAGAGCGGCAG
Seq A exon
NA
Seq C2 exon
TTTTATATTAAAAGAGCACAACCATGTTTCGGAATAGTCTCAAGATGCTTCTTACTGGTGGGAAATCAAGTCGGAAAAATAGGTCAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052840-0-2,1-2-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.689
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCCTCCGTGGGGCGTC
R:
CACTTGACCTATTTTTCCGACTTGA
Band lengths:
188-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]