RnoALTD0030105-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000008859 | Tank
Description
TRAF family member-associated NFKB activator [Source:RGD Symbol;Acc:628859]
Coordinates
chr3:47453821-47475131:+
Coord C1 exon
chr3:47453821-47453972
Coord A exon
NA
Coord C2 exon
chr3:47474984-47475131
Length
0 bp
Sequences
Splice sites
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
3' ss Seq
GATGTTCTGATATTTTCCAGAGC
3' ss Score
8.3
Exon sequences
Seq C1 exon
GGGCTGGCCCTGAGGATGGAAGGTGAAACGTTAATGACTCAGAGCGCAGTCGCTGCCCTCTGAACTGGAACGGAAAGCAACTTCCGGCTGCAGTCGTTCTGCCGGGCACCGGCGACCTGTAGCGTGAGAGCGCGCGGCGGAAACCCTCAACT
Seq A exon
NA
Seq C2 exon
AGCTGGCATTCGTACCATCCTTTATAGTGATGCTACAGGACAAAGAGGAATGGATAAAAACATTGGCGAGCAACTCAATAGAGCATATGAAGCCTTCCGACAGGCATGCATGGATAGAGATTCAGCAGTAAGAGAGCTGCAGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008859-1-3,2-3-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.388
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF040127=PspA_IM30=PU(46.3=93.9),PF067856=UPF0242=PU(36.9=93.9),PF048597=DUF641=PU(34.8=93.9),PF041569=IncA=PU(25.5=72.7)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAATGACTCAGAGCGCAGTCG
R:
AAGGATGGTACGAATGCCAGC
Band lengths:
143-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]