RnoALTD0030637-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000002093 | Tgfbr3
Description
transforming growth factor beta receptor 3 [Source:RGD Symbol;Acc:61821]
Coordinates
chr14:3583585-3610213:+
Coord C1 exon
chr14:3583585-3595031
Coord A exon
NA
Coord C2 exon
chr14:3610076-3610213
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCAG
5' ss Score
2.03
3' ss Seq
TGCTTTGTGTTGACTCCTAGGTT
3' ss Score
8.73
Exon sequences
Seq C1 exon
GATCTAATGACACTCCTCTTCCCCCTCGCTTGCTCTTAGACCAGATTTGAAGTGGTTGTTTTGGAAAATGTGCTGTGAGTTCCTGTGTAGACCTTCAGACTGGGGCAGGAGGTTCTGCCTGGCAAATCCTTGGGCTCTGATAGGCATCTTTCGTAGCAGAACTTTGATGCTTGACCCTGGGAGGCCTTGGAATCAGCACAACATGGAGCTTGGGGCACAGCACTGACTTTGCTCATCTTTCAATTCTGCTGCCCTGGCCCTTTCCAGTGTCCAGATTGCTTTACCAGAGCTACGGGCTGAAGCCCATAGACTTCTGGTTGCTATGGTGATTTGTAGCCTTCCATGGAACTTCCGTCTCCAGGGAAACTGAAGACCTTGCAGCTGCCCCAACCTTTCTGGTGTCATACCTGAGGCAGAGGTCTTCACCAAGCTGGTAGCAAGCCCATCAGTGGTCCGTTTGTGTCAACAAATACTTGGAAATGAGGCCCCTCACCCTCGAG
Seq A exon
NA
Seq C2 exon
GTTACCCTGCACCTGAACCCCATTGCCTCAGTGCACACTCACCACAAACCTATCGTGTTCCTGCTCAACTCCCCCCAGCCCCTGGTGTGGCATCTGAAGACGGAGAGACTGGCCGCTGGTGTCCCCAGACTCTTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002093-12-7,13-7-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.109
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAGCAAGCCCATCAGTGGTC
R:
CTCCGTCTTCAGATGCCACAC
Band lengths:
172-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]