RnoALTD0031314-1/4 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000001976 | Tmprss2
Description
transmembrane serine protease 2 [Source:RGD Symbol;Acc:620766]
Coordinates
chr11:38091012-38103342:-
Coord C1 exon
chr11:38103242-38103342
Coord A exon
NA
Coord C2 exon
chr11:38091012-38091079
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TGTGTGCTTCTTTCCCTCAGGTC
3' ss Score
12.64
Exon sequences
Seq C1 exon
CTCCGGAGATTTAAGCGAGAGCTGGAGTAGGTCGTGTACTTGGAGTGGACAAGGAAACCGAGAGCCCCGGCGGAGGCGGAGAGGGGCGGGGAGCACAGCAG
Seq A exon
NA
Seq C2 exon
GTCACCTGGAGGAAGCCACATACTGACCTCCTCATGCTGCTGACACAGGCAGGATGGCATTGAACTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001976-0-1,1-1,2-1,3-1-1/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.200
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCGGAGATTTAAGCGAGAG
R:
AGTTCAATGCCATCCTGCCTG
Band lengths:
167-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]