RnoALTD0031318-2/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000026650 | Tmprss4
Description
transmembrane serine protease 4 [Source:RGD Symbol;Acc:1305033]
Coordinates
chr8:49481641-49483305:-
Coord C1 exon
chr8:49483256-49483305
Coord A exon
chr8:49483192-49483255
Coord C2 exon
chr8:49481641-49481793
Length
64 bp
Sequences
Splice sites
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
3' ss Seq
CTCCCTAATGTACCTTCCAGTCA
3' ss Score
5.88
Exon sequences
Seq C1 exon
ATGTCCCTCCCTTTCGCAAACCCCGAAGTCCCCTGGAGACCTTCAAAAAG
Seq A exon
GTGGGGATCCCCATCATCGCGGTGATTCTGAGCCTGATAGCCCTCGGGATTGTGGCCCTCCTCA
Seq C2 exon
TCAAAGTGGTTCTGGATAAATACTACTTCATCTGCGGAAATCCCCTGACCTTCATTCCGAGGGGCCAGATGTGTGATGGCCACCTTGACTGTGCCTCGGGGGAGGATGAGGAACACTGTGTCAAGAACTTCCCTGAAAAGCCTGGAGTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026650-4-6,5-6,6-6-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.103 A=NA C2=0.019
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0005713=Ldl_recept_a=WD(100=63.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGTCCCCTGGAGACCTTCA
R:
ACAGTGTTCCTCATCCTCCCC
Band lengths:
145-209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]