RnoALTD0031615-4/4 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000010694 | Tpbg
Description
trophoblast glycoprotein [Source:RGD Symbol;Acc:621453]
Coordinates
chr8:93492122-93495130:+
Coord C1 exon
chr8:93492122-93492156
Coord A exon
chr8:93492157-93492644
Coord C2 exon
chr8:93492833-93495130
Length
488 bp
Sequences
Splice sites
5' ss Seq
CGGGTACTG
5' ss Score
5.43
3' ss Seq
TTCTCTCCCTCGTGTCCCAGGTC
3' ss Score
10.45
Exon sequences
Seq C1 exon
CCTCGGAGTTGGCTTTGGAAGCGCGGGGCGCGGAG
Seq A exon
GTGAGCAGTGGGACCGAGCGGCCAGGTTTGGAGCCTGGAGGCGGGACCCGGGCTCCGTTCTATACCAGGGCGTGATGAGAGCGGGGGTCCTGGCTGCTACCCCGCCCACGGTCCCACGGCCGCTTCGTTGGCGGGTTCCCTCCGCTCTTCTGGAGGCGCCTGGACCCTCTCGGGGTCGGGGAGCTGGAGGCCCACGAGTCGAGAGTGGGCGACAGCTCTAGGGCTCTGCTCTCCTTTCCCCACTAATCCAAGGAGGTACAAAAGAAGGGCTCGGAAGAGTCCAGTAACCCGAAACTTCGCTCGCAACCCAACCTGGGAGGGGAGGAGCGGCGGGGGCGGGGACCCCGGAAGGCAGGTGGTCGGCGGGGGCGGTGGGAGCTGGGATCCGGAAAAGGGAGAAGTTTTCTCGCTGGACTCCGCGGGGTCTGCGTGAAGTTCGAGGCGGGAGAAGGGCAATCCGGCTAGAAGCCAGGCGGGAGGTGGCCCGG
Seq C2 exon
GTCGCCCATCCGATCCTTCCCTGAGAGAGGCGCCAACAAAGGAGTTGAGGAGGTGCCACCCACCCCAGCGGCGGCTGGAGGAGGAGCGCCAAGGCCCGTGTCCCGACCCGCCGTGCGTACTCACTGGAGGGAAGGGCGGGGTACCGCTCCGGGAGGGAGACGCCCGGTGGCCCGGGGTTAGCCAAGTTCCAGCTTTGGCGTCCCTTCCTTGGCTCCCACGCGAGGAAAGTTTGCCGTCGACGCTTGCGGCCGTCTCGCGCCCGCCGGGCCCAGGCGGTCGAGTCTTCGGAGCGGGCACCGTCCCAGCTCCGGGGAACCGCGAGCCGCGATGCCTGGGGCGGGCTCCCGGGGCCCCTCTGCCGGGGACGGACGGCTGCGGTTGGCAAGGCTGGCGCTAGTGCTGCTGGGTTGGGTCTCCGCGTCGGCCCCCAGCTCTTCGCTACCCTCGTCTTCCACCTCCCCGGCTGCCTTCCTGGCTTCGGGGTCTGCGCAGCCTCCGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010694-1-1,2-1,3-1,4-1-4/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0146213=LRRNT=WD(100=7.0),PF138551=LRR_8=WD(100=15.0),PF138551=LRR_8=WD(100=17.8)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCGGAGTTGGCTTTGGAAG
R:
TGCCCGCTCCGAAGACTC
Band lengths:
332-820
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]