RnoALTD0031705-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000024837 | Tpte2
Description
transmembrane phosphoinositide 3-phosphatase and tensin homolog 2 [Source:RGD Symbol;Acc:1305825]
Coordinates
chr16:74660792-74662087:-
Coord C1 exon
chr16:74661987-74662087
Coord A exon
NA
Coord C2 exon
chr16:74660792-74660887
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGCT
5' ss Score
5.82
3' ss Seq
TCATTTCCTTTTCTTTTTAGATT
3' ss Score
11.39
Exon sequences
Seq C1 exon
AAGAGAATGGAGAAAAAGAAAAGCTGTTATTCTGAAGGGCAGCGGGAGAGAAGACTGGTGGCAGGAACTGGAGTGAACTCAGCTCCCGCTTCAGTCAAGAG
Seq A exon
NA
Seq C2 exon
ATTAATTGTAAATTGAGTTTAATCACAAGGCAATACCATGCAGGGAGTCAAAAAGAGCCATTTGTATCTCTGGATGGAGCACTACGGATACGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024837-2-1,3-1-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGAATGGAGAAAAAGAAAAGCTGT
R:
CCATCGTATCCGTAGTGCTCC
Band lengths:
196-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]