RnoALTD0031717-1/4 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000009156 | Tra2a
Description
transformer 2 alpha homolog [Source:RGD Symbol;Acc:1562563]
Coordinates
chr4:78913333-78914060:-
Coord C1 exon
chr4:78913982-78914060
Coord A exon
NA
Coord C2 exon
chr4:78913333-78913466
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAAGTATTA
5' ss Score
-2.11
3' ss Seq
AATACTGTCTTCTTTGTTAGGAG
3' ss Score
6.9
Exon sequences
Seq C1 exon
GTTAATGTTCGTGAAGAAATTGAAGAGTTTTTTCCAAGAATGTGGAAGATAAATCAAGATAAAAGAAGGCTAATGAAAA
Seq A exon
NA
Seq C2 exon
GAGTCTCGCTCTCAGTCAAAATCTCCAACGGGAACTCCTGCTCGTGTAAAATCAGAGAGCAGGTCAGGATCTCGTAGTCCATCAAGGGTTTCCAAACATTCTGAATCCCATTCTCGATCAAGATCAAAATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009156-4-4,5-4,6-4,7-4-1/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.844
Domain overlap (PFAM):
C1:
PF104084=Ufd2P_core=PD(76.0=79.2)
A:
NA
C2:
PF0345912=TOBE=PD(31.7=50.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
ENSRNOT00000012325fB15535
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCGTGAAGAAATTGAAGAGTT
R:
GGATTTTGATCTTGATCGAGAATGGG
Band lengths:
206-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]