RnoALTD0031727-4/6 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000006238 | Traf2
Description
Tnf receptor-associated factor 2 [Source:RGD Symbol;Acc:1310457]
Coordinates
chr3:2764261-2770706:-
Coord C1 exon
chr3:2770606-2770706
Coord A exon
chr3:2770522-2770605
Coord C2 exon
chr3:2764261-2764477
Length
84 bp
Sequences
Splice sites
5' ss Seq
GGGGTTAGA
5' ss Score
-1.07
3' ss Seq
TGTTTTGTTTTGTTTTTTAGGGC
3' ss Score
12.56
Exon sequences
Seq C1 exon
GCTCCTGGTAGGCTCCGGCGTCTGTCCGTCAGACGGGGCGGGCCGCGACAGCGGGGGTGGTCCCAGCCGGCACTGAGTTCCGGGCGCGCGAAGACCGTTGG
Seq A exon
GTGAGGCGGCGCGGATCTAAGAGGGGGTCGATTCTCAGCGGCGGCCGGGCCCGGGTCAGGCACCGGGTGGGAGTGGCGATTGGG
Seq C2 exon
GGCTTTGTGGTGCGTGGGTTATAACTCACATGGCTGCAGCCAGTGTGACTTCCCCTGGCTCCCTAGAACTGCTGCAGCCTGGCTTCTCCAAGACCCTTCTGGGGACAAGGTTAGAAGCCAAGTACCTGTGTTCAGCCTGCAGAAACATCCTGCGGAGGCCATTCCAGGCCCAGTGTGGGCACCGCTACTGCTCCTTCTGCCTGACCAGCATCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006238-1-1,2-1,3-1,4-1,5-1,6-1-4/6
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0009720=zf-C3HC4=PU(74.4=46.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCCGGCACTGAGTTCC
R:
TTTCTGCAGGCTGAACACAGG
Band lengths:
183-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]