RnoALTD0031731-3/4 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000008145 | Traf3
Description
Tnf receptor-associated factor 3 [Source:RGD Symbol;Acc:1304633]
Coordinates
chr6:135610744-135672693:+
Coord C1 exon
chr6:135610744-135610852
Coord A exon
chr6:135610853-135610903
Coord C2 exon
chr6:135672583-135672693
Length
51 bp
Sequences
Splice sites
5' ss Seq
GGGGCTTGC
5' ss Score
-10.17
3' ss Seq
GCATTCCTCTTGGTTCCCAGGTC
3' ss Score
8.95
Exon sequences
Seq C1 exon
ATGAATGACTGATTCATAGTCGGAGAGCTGCAGAGAGGCTGGAAGGCAGGCGGTTCTGGGATCCAGCTGGGGCCGAATGCACACCTTCCACCTTCGATTAACACCAAAG
Seq A exon
GTCAGAGTGGGCTCCCTACGGGTGAGCCATTAAAACGATCCCTGCCGCGGG
Seq C2 exon
GTCCAGGGTCCCCGTTACTTGAAGGATAAGGCTGGCACTGCTCCGACATCTTTGTGGAAGCTTCTCCCTCACTTCTGAGCTTCCCTGGACTCCTTACAGCGTATGACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008145-5-3,6-3,7-3,8-3-3/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACACCTTCCACCTTCGATT
R:
TACGCTGTAAGGAGTCCAGGG
Band lengths:
134-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]