RnoALTD0032198-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000054648 | Tspy1
Description
testis specific protein, Y-linked 1 [Source:RGD Symbol;Acc:3912]
Coordinates
chrY:154474-155263:+
Coord C1 exon
chrY:154474-154559
Coord A exon
NA
Coord C2 exon
chrY:155171-155263
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAAT
5' ss Score
6.6
3' ss Seq
ATTCTCATTTTTTTCTACAGGAT
3' ss Score
10.88
Exon sequences
Seq C1 exon
ATAATCATGGATGACTTGTGGCCAAATCCTCTTTACTACTACCCTAAGGAAGACCACTCATGAAGAGAGAATTAGGACTGTGCCAG
Seq A exon
NA
Seq C2 exon
GATAAAAAGCAGAGCATTTCTGACTGTAGACCATTAATGAAGATGCTCATCGTGTAAACTGGAATTGACTGAGATAAATACTGGCAAAGGTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054648-4-4,5-4-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0095613=NAP=PD(9.1=81.0)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGACTTGTGGCCAAATCCTCT
R:
TGGTCTACAGTCAGAAATGCTCT
Band lengths:
108-120
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]