RnoALTD0032247-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000005868 | Ttc21b
Description
tetratricopeptide repeat domain 21B [Source:RGD Symbol;Acc:1565122]
Coordinates
chr3:52343119-52350478:-
Coord C1 exon
chr3:52350361-52350478
Coord A exon
NA
Coord C2 exon
chr3:52343119-52343276
Length
0 bp
Sequences
Splice sites
5' ss Seq
TGGGTAAGG
5' ss Score
9.08
3' ss Seq
TCATTTTTGTCTCCCATTAGGTA
3' ss Score
10.93
Exon sequences
Seq C1 exon
GGACCGATTTTGAAAGCATGGCTTGATATTACAAGAGGGAAGGAACCTTATGCTAAAAAAGCCCTACGGTATTTTGAGGAGGGATTACAAGATGGAAACGATATTTTTGCTCTGCTGG
Seq A exon
NA
Seq C2 exon
GTACTGTGCCTTGAGATGCGACAGAATTATTCTGGAGCTCTGGAGACTGTGAGTCAGATAATTGTGAACTTCCCGAGCTTCCTTCCTGCTTTTGAGAAGAAAATGAAATTACAACTGGCTTTGCAGGATTGGGATCAGACGGTGGAGACGGCGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005868-7-6,8-6-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.004
Domain overlap (PFAM):
C1:
PF134241=TPR_12=PD(42.9=73.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTACGGTATTTTGAGGAGGG
R:
CACAGTCTCCAGAGCTCCAGA
Band lengths:
108-113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]