RnoALTD0032372-3/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000017445 | Tubb2b
Description
tubulin, beta 2B class IIb [Source:RGD Symbol;Acc:1309427]
Coordinates
chr17:31443383-31482759:+
Coord C1 exon
chr17:31443383-31444337
Coord A exon
chr17:31444338-31444485
Coord C2 exon
chr17:31482654-31482759
Length
148 bp
Sequences
Splice sites
5' ss Seq
GGGGTGGGG
5' ss Score
-0.14
3' ss Seq
GTCAGCTCTTGTCCCCACAGGCA
3' ss Score
10.75
Exon sequences
Seq C1 exon
GAACGCAGACCTGCGCAAGCTGGCTGTGAACATGGTGCCTTTCCCACGCCTGCACTTCTTCATGCCAGGCTTCGCACCTCTGACCAGCAGGGGCAGCCAGCAGTACCGAGCCCTGACAGTGCCCGAGCTCACCCAGCAGATGTTCGACTCCAAGAACATGATGGCTGCCTGCGACCCACGCCATGGCCGCTACCTGACCGTAGCCGCCATTTTCCGGGGCCGCATGTCCATGAAGGAGGTGGATGAGCAGATGCTCAACGTGCAGAACAAGAACAGCAGCTACTTCGTGGAGTGGATCCCCAACAATGTGAAGACGGCCGTGTGTGACATCCCTCCTCGTGGCCTCAAGATGTCAGCCACCTTCATTGGCAACAGCACCGCCATCCAGGAGCTGTTCAAGCGCATCTCGGAGCAGTTCACTGCCATGTTCAGGCGCAAGGCTTTCCTGCACTGGTACACGGGCGAGGGCATGGACGAGATGGAGTTCACCGAGGCGGAGA
Seq A exon
GCAACATGAATGACCTGGTGTCTGAGTACCAGCAGTACCAGGACGCCACGGCTGATGAGCAGGGCGAGTTCGAGGAGGAGGAGGGCGAGGATGAGGCTTGAGTTCCCCAGGCCAAGCAGGTTAGGGAAAGCTGAGGTGAAAGGAGGGG
Seq C2 exon
GCAACAAATATGTACCTCGGGCCATCCTAGTGGACCTGGAGCCAGGCACCATGGACTCAGTGAAGTCGGGACCATTCAGCCAGATCTTCAGGCCAGACAACTTTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017445-8-8,9-8,10-8-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.102 A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0009120=Tubulin=PD(59.0=37.0),PF0395312=Tubulin_C=WD(100=34.7)
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGCTACTTCGTGGAGTG
R:
CTAGGATGGCCCGAGGTACAT
Band lengths:
257-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]