RnoALTD0034204-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000009595 | Zbtb48
Description
zinc finger and BTB domain containing 48 [Source:RGD Symbol;Acc:1311581]
Coordinates
chr5:169198246-169199528:-
Coord C1 exon
chr5:169199030-169199528
Coord A exon
chr5:169198857-169199029
Coord C2 exon
chr5:169198246-169198493
Length
173 bp
Sequences
Splice sites
5' ss Seq
GAGGTACTG
5' ss Score
7.67
3' ss Seq
TGCTGCCTCCTCTACTCTAGTGG
3' ss Score
7.06
Exon sequences
Seq C1 exon
ATTATGGATGGTTCCTTCGTACAGCACAGCGTGAGGGTTCTGCAGGAACTCAACAAGCAGCGTGAGAAGGGCCAGTATTGCGACGCCACGCTGGACGTGGGGGGCCTGGTGTTCAAGGCGCACTGGAGTGTCCTGGCGTGTTGCAGCCGTTTCTTCCAGAGAATCTACGGGGATGGCTCAGGGGGCAGTGTTGTCCTCCCTGCAGGTTTTGCTGAGATTTTTGGCCTCCTGCTGGACTTTTTCTACACTGGCCACCTCGCCCTCACCTCAGGGAACAGGGATCAGGTGCTCTTGGCAGCCAAAGAGTTGAGGGTGCCTGAGGCTGTGGAGCTATGTCAGAGCTTCCAGCCCCAAACCTCAGCGGGACAGGCACAGAGTGGACCGGGCCAAGTTTCCTCCCAGGATGTGAAAAGCCACCTCAAGGAGCCAACAGACTTGGATGAGGAGGAAGTTTTCAGGACTCTGAGCCTGGCCTCTGTGGATCAGGAGCCCAGAGACG
Seq A exon
GTGAGCAGCCCCAGCTCAGCACACCTGCCCAGAGCAGCCCGGCCTTCCTCTGTGGGAAACTCAAGCAGGTGTTGAAGCCTTCTCCCCCAGCGGACAAAGAGTCTGAGGACAGCAAAGAGCCCCCAAGGCCTTTTGAAGCTGAAGGTGCCCCACTGCAGGGCGAGAGCAATGAG
Seq C2 exon
TGGGAAGTGGTGGTTCAAGTTGAGGACGACAGGGATGGTGATGGCGATTATGCATCTGAGCCTGAGACTGTGCTGACCAGGAGGAAGTCAAAAGTGATTAGAAAGCCGTGTGCGGCAGAGCCAGCCCTGGGTGCAGGCTCCCTCACAGCCGAGCCCACCGAGGGCAGAAAAGGTGCAGCAGTTCCGGTCGAATGTCCCACATGTCATAAGAAGTTCCTCAGCAAATACTACCTAAAAGTCCACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009595-3-1,4-1-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.471 A=NA C2=0.578
Domain overlap (PFAM):
C1:
PF0065126=BTB=WD(100=46.6)
A:
NA
C2:
PF134651=zf-H2C2_2=PU(24.0=7.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGGCTGTGGAGCTATGTCA
R:
AGCACAGTCTCAGGCTCAGAT
Band lengths:
256-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]