RnoALTD0034322-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000060348 | Zdhhc23
Description
zinc finger, DHHC-type containing 23 [Source:RGD Symbol;Acc:1303254]
Coordinates
chr11:61661724-61662527:+
Coord C1 exon
chr11:61661724-61661786
Coord A exon
NA
Coord C2 exon
chr11:61662256-61662527
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACT
5' ss Score
8.63
3' ss Seq
TTTTTTTTTTTATTGCTCAGGCG
3' ss Score
8.37
Exon sequences
Seq C1 exon
GAGGCGCAACCGCGCCGAGGGGAGCCGGTCCTCCTCCCGGTCCCCGCCTCTGTCGGAGGGCAG
Seq A exon
NA
Seq C2 exon
GCGTTGGCGTTAATGAGAAGTGAAGATGTGTTTACAGGATGTGAGTTGAGTTCTCTCCACCTTTACCTTCCGAGAGCTGCTTCTTATGCCTCATGGTGACAGGTACAAATCTTTACGCTAAAAGGCAATATGAAGCCAGTAAAAAAAAAGAAAACCGAAGAGCCTGAATTGGAGCCCCTGTGTTGCTGTGAGTACATAGATCGAAATGGGGAAAAGAACCACGTGGCTGCCTGTTTGTGTGATTGTCAGGACCTCGATGAAGGCTGTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060348-3-1,4-1-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.146
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]