RnoALTD0034388-2/3 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000001341 | Zfp113
Description
zinc finger protein 3 [Source:RGD Symbol;Acc:6489147]
Coordinates
chr12:19292329-19294956:-
Coord C1 exon
chr12:19294845-19294956
Coord A exon
chr12:19294834-19294844
Coord C2 exon
chr12:19292329-19292420
Length
11 bp
Sequences
Splice sites
5' ss Seq
GCAGTAAGG
5' ss Score
4.69
3' ss Seq
GCCCTGGTATTGTCCTTCAGCTC
3' ss Score
8.04
Exon sequences
Seq C1 exon
TCCTTCAAAACCTGCCTCCTGCAGAATCTACAGCTAGCAGACCAGCGACCAGAGCGTTTCCCCTGCCCATGGAAACCCAGGCAGACCATGCATCTCAGGAACCCCGGCCCCT
Seq A exon
GTTAGAGAGCA
Seq C2 exon
CTCTTTCTTCTTCAAAAGTCCCTTCCTTTCCTGACAAGGACAGTCTCGGGGACAAGATGTTGGCTGCTGCACTTCTAAAGGCCAAGTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001341-2-2,3-2,4-2-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.947 A=NA C2=0.194
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCATGCATCTCAGGAACCC
R:
AAGTGCAGCAGCCAACATCTT
Band lengths:
103-114
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]