RnoALTD0034398-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000001789 | Zfp148
Description
zinc finger protein 148 [Source:RGD Symbol;Acc:62063]
Coordinates
chr11:70540956-70550977:-
Coord C1 exon
chr11:70550852-70550977
Coord A exon
chr11:70550834-70550851
Coord C2 exon
chr11:70540956-70541079
Length
18 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGC
5' ss Score
6.3
3' ss Seq
TGCCTTTATTTTTAAACTAGATC
3' ss Score
6.74
Exon sequences
Seq C1 exon
ATAAGTGTAAAGCAGGAGATTACTTTTACTGATGTATCTGAGCAACTGATGAGAGACAAAAAACAAGTGAGAGAGCCAGTAGACTTACAGAAAAAGAAGAAGCGGAAACAACGCTCTCCTGCAAAA
Seq A exon
GTAAGAGAATATGTTAAG
Seq C2 exon
ATCCTTACAATAAATGAGGATGGATCACTTGGTTTGAAAACCCCTAAATCTCACGTCTGTGAGCACTGCAACGCTGCCTTTAGAACGAACTATCACTTACAGAGACATGTCTTCATCCATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001789-19-14,20-14-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.595 A=NA C2=0.190
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=PU(38.5=23.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAACAACGCTCTCCTGCAA
R:
AGTTCGTTCTAAAGGCAGCGT
Band lengths:
114-132
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]