RnoALTD0034404-1/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000006972 | Zfp189
Description
zinc finger protein 189 [Source:RGD Symbol;Acc:1306510]
Coordinates
chr5:64790186-64790672:+
Coord C1 exon
chr5:64790186-64790205
Coord A exon
NA
Coord C2 exon
chr5:64790588-64790672
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
CGGCTGTGTTTCTTACCCAGGAG
3' ss Score
8.13
Exon sequences
Seq C1 exon
GCACAATGTCTGGACTCAAG
Seq A exon
NA
Seq C2 exon
GAGGAGTGGGGTTATCTGGATGCAGCTCCGAGAAGCCTGTATAAAGATGTCGTGATGGACAGTTATGGAAAGCTGGTCTCGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006972-1-2,2-2-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.052
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PU(0.1=0.0)
A:
NA
C2:
PF0135222=KRAB=FE(90.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]