RnoALTD0034406-4/4 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000030750 | Zfp2
Description
zinc finger protein 2 [Source:RGD Symbol;Acc:1562610]
Coordinates
chr10:36388137-36395547:-
Coord C1 exon
chr10:36395494-36395547
Coord A exon
chr10:36395476-36395493
Coord C2 exon
chr10:36388137-36389751
Length
18 bp
Sequences
Splice sites
5' ss Seq
TAGGTAATC
5' ss Score
5.91
3' ss Seq
TAAGTTTTACTTTTTTTCAGGCC
3' ss Score
8.33
Exon sequences
Seq C1 exon
GCCTGCCATGTTGTCTTTGAGCATCCTGTCTTCCTCGGAGGATCTCCTAGGCCG
Seq A exon
GTTTGTAAAACGTTGTAG
Seq C2 exon
GCCGGGAGTCAAGACTTGAAACCAGACAACTCCAAAGTCCACCATTACTGAAAATTTGCCCTATGGGGTCATAATGGACAGGGAAGATCTCTGGCATTCAGCTTTAGGGGCTGTCTGGGATTCTACCTGTTGGTTAGAAGAGCAACAGGAAAGATATCTGGGCCAAGTGACAGTGACCCAAAAGGAAATATTTAATGAGAAGAGGGTGTGTGGAGGTAATAAAACTGAAAACGGTTCCATTGAGCATTCAATGCTTAGTATACCACAAAGCATTCCTGTGACAATAAGACTTTGTAACTGGAATTCATATGGAAAAGGTTCTAACCAAAATCCCAAGTTAATGAAATCTTCAAGAATGTTTGTAAGAAAGAAAATATATGAATGTGATGAGTGTGGGAAAAGCTTCAGTCAGAGTTCATCGCTGCTTAAGCACCAGAGGATTCACACTGGGGAGAAACCTTACAAATGTAATGTATGTGACAAGCATTTCATCGAACGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030750-5-6,6-6,7-6,8-6-4/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.4),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6),PF134651=zf-H2C2_2=WD(100=5.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCTGTCTTCCTCGGAGGA
R:
TCCCTGTCCATTATGACCCCA
Band lengths:
117-135
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]